Following statement will compare values in two databases and gives you records that not matched.
SELECT stage,live,path,scope_id FROM
(
SELECT
(CASE
WHEN (S.value = L.value) THEN ''
ELSE 'N/M'
END) as matched,
S.scope_id,
S.path,
S.value AS 'stage',
L.value AS 'live'
FROM
cin_stage.core_config_data S
INNER JOIN
cin_live.core_config_data L ON S.path = L.path
) RES
WHERE matched = 'N/M'
ORDER BY scope_id
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